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An RNA folding algorithm including pseudoknots based on dynamic weighted matching

Paper ID Volume ID Publish Year Pages File Format Full-Text
15417 1411 2006 5 PDF Available
Title
An RNA folding algorithm including pseudoknots based on dynamic weighted matching
Abstract

On the basis of maximum weighted matching (MWM) algorithm, we introduced a dynamic weight related with stem length and used a recursive algorithm to predict RNA secondary structures by searching the stem structure with maximum weight summation step-by-step. This algorithm not only avoids the complicated free energy calculation, but also it could attain higher prediction accuracy. Moreover, our algorithm can predict most types of potential pseudoknots in the RNA structure.

Keywords
RNA secondary structure; Pseudoknots; Dynamic weighted matching
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An RNA folding algorithm including pseudoknots based on dynamic weighted matching
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Publisher
Database: Elsevier - ScienceDirect
Journal: Computational Biology and Chemistry - Volume 30, Issue 1, February 2006, Pages 72–76
Authors
, , , ,
Subjects
Physical Sciences and Engineering Chemical Engineering Bioengineering
Get Full-Text Now
Don't Miss Today's Special Offer
Price was $35.95
You save - $31
Price after discount Only $4.95
100% Money Back Guarantee
Full-text PDF Download
Online Support
Any Questions? feel free to contact us