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Codon phylogenetic distance

Paper ID Volume ID Publish Year Pages File Format Full-Text
15554 1427 2007 8 PDF Available
Title
Codon phylogenetic distance
Abstract

We develop here an analytical evolution model based on a trinucleotide mutation matrix 64×6464×64 with nine substitution parameters associated with the three types of substitutions in the three trinucleotide sites and with non-zero elements on its main diagonal. It generalizes the previous models based on the nucleotide mutation matrices 4×44×4 and the trinucleotide mutation matrices 64×6464×64 with zero elements on its main diagonal. It determines at some time t the exact occurrence probabilities of trinucleotides mutating randomly according to these nine substitution parameters. Furthermore, applications of this model allow to generalize an evolutionary analytical solution of the common circular code of eukaryotes and prokaryotes and also to derive a codon phylogenetic distance.

Keywords
Evolution model; Stochastic model; Analytical solution; Mutation matrix; Gene; Trinucleotide; Codon; Circular code; Phylogenetic distance
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Codon phylogenetic distance
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Publisher
Database: Elsevier - ScienceDirect
Journal: Computational Biology and Chemistry - Volume 31, Issue 1, February 2007, Pages 36–43
Authors
,
Subjects
Physical Sciences and Engineering Chemical Engineering Bioengineering
Get Full-Text Now
Don't Miss Today's Special Offer
Price was $35.95
You save - $31
Price after discount Only $4.95
100% Money Back Guarantee
Full-text PDF Download
Online Support
Any Questions? feel free to contact us