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PTreeRec: Phylogenetic Tree Reconstruction based on genome BLAST distance ☆

Paper ID Volume ID Publish Year Pages File Format Full-Text
15566 1430 2006 3 PDF Available
Title
PTreeRec: Phylogenetic Tree Reconstruction based on genome BLAST distance ☆
Abstract

Phylogenetic Tree Reconstruction (PTreeRec) is a web-based tool for automatic phylogeny inferences from whole-genome sequences, which accepts files of DNA sequences in the FASTA format and allows users to save the output tree file, and displays the inferred tree through an applet in a web browser. PTreeRec involves three basic steps. First, regions of maximal segment pairs (MSPs) based on an all-against-all pairwise comparison of genomes are located. Second, a distance matrix is calculated from MSP scores or coverage. Finally, a phylogenetic tree is reconstructed by the neighbor-joining method.

Keywords
Phylogenetic tree; Whole-genome sequences; PTreeRec; Maximal segment pairs; BLAST distance
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PTreeRec: Phylogenetic Tree Reconstruction based on genome BLAST distance ☆
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Publisher
Database: Elsevier - ScienceDirect
Journal: Computational Biology and Chemistry - Volume 30, Issue 4, August 2006, Pages 300–302
Authors
, , , , , , ,
Subjects
Physical Sciences and Engineering Chemical Engineering Bioengineering
Get Full-Text Now
Don't Miss Today's Special Offer
Price was $35.95
You save - $31
Price after discount Only $4.95
100% Money Back Guarantee
Full-text PDF Download
Online Support
Any Questions? feel free to contact us