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13C metabolic flux analysis in complex systems

Paper ID Volume ID Publish Year Pages File Format Full-Text
16175 42488 2011 6 PDF Available
Title
13C metabolic flux analysis in complex systems
Abstract

Experimental determination of in vivo metabolic rates by methods of 13C metabolic flux analysis is a pivotal approach to unravel structure and regulation of metabolic networks, in particular with microorganisms grown in minimal media. However, the study of real-life and eukaryotic systems calls for the quantification of fluxes also in cellular compartments, rich media, cell-wide metabolic networks, dynamic systems or single cells. These scenarios drastically increase the complexity of the task, which is only partly dealt by existing approaches that rely on rigorous simulations of label propagation through metabolic networks and require multiple labeling experiments or a priori information on pathway inactivity to simplify the problem. Albeit qualitative and largely driven by human interpretation, statistical analysis of measured 13C-patterns remains the exclusive alternative to comprehensively handle such complex systems. In the future, this practice will be complemented by novel modeling frameworks to assay particular fluxes within a network by stable isotopic tracer for targeted validation of well-defined hypotheses.

First Page Preview
13C metabolic flux analysis in complex systems
Publisher
Database: Elsevier - ScienceDirect
Journal: Current Opinion in Biotechnology - Volume 22, Issue 1, February 2011, Pages 103–108
Authors
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Subjects
Physical Sciences and Engineering Chemical Engineering Bioengineering